2761 days ago
Understanding Greedy Algorithms
...ge is also useful for the same: http://learninglover.com/examples.php?id=59 http://www.cs.rpi.edu/~magd...%20Assembly%20Intro.pdf http://lsl.sinica.edu.tw/Services/Class/files/20150612449.pdf http://www.cs.jhu...2759 days ago
2758 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...structural variant breakpoints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times faster and 25% more accurate than popular N...2757 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces more contiguous assemblies, higher N50 values and lower number of c...2756 days ago
E-MEM: Efficient computation of Maximal Exact Matches
...lease cite: N. Khiste, L. Ilie, E-MEM: Efficient computation of Maximal Exact Matches for very large genomes, Bioinformatics 31(4) (2015) 509 -- 514. For any question...2756 days ago
2752 days ago
2029 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...to locate the translation initiation site with great accuracy (96% of the 5' ends in the Ecogene data set...avorably with other gene identification programs, and usually falls under 5%. GC-Content Indifferent: Pr...2742 days ago
2723 days ago