Results for "Big data"
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methylKit is an R package for DNA methylation analysis a...ing. The package is designed to deal with sequencing data from RRBS and its variants, b...dition, methylKit can deal with base-pair resolution data for 5hmC obtained from Tab-se...2920 days ago
- Tools for making blobplots or Taxon-Annota...ualise the contents of genome assembly data sets as a QC step Blaxter La...ualise the contents of genome assembly data sets as a QC step. This repo...control of high-throughput sequencing data). It contains bash/perl/R sc...
2910 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (oft...likely to be of use on its own as it requires contig data to be supplied in a format th...
2909 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological s...methods analyse unprocessed sequencing data without relying on prior know...clustering genomic and transcriptomic data with no limitation on ge-nome...pplementary information: Supplementary data are available at Bioinformati...2907 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods pap...r An analysis and visualization platform for 'omics data http://merenlab.org/proj...
2907 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms,...then compared the method to existing HGT detection tools using a larger strain data set. When combined with addi...
2901 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools...xercises as it is a language in itself and is used more often to manipulate NGS data as compared to the other comm...2901 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, nex...meaning that you only need to install SAMtools, and no other tools, and sample data sets are provided. Terms in b...
2900 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platfo...ccurate results, A5-miseq requires Illumina data with certain characteristics....ssembler if a tool like FastQC reports your data quality is dubious. You have...
2844 days ago
- Recent studies of the human genome have in...regulatory elements. These interaction datasets are important resources t...blic ontologies, making sense of these datasets demands integrative and e...le functional genomics and interaction datasets, 3) querying network comp...
2896 days ago
