Results for "Data Mining Algorithm"
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methylKit is an R package for DNA methylation analysis and annotation from high-throughput...encing. The package is designed to deal with sequencing data f...addition, methylKit can deal with base-pair resolution data for...2948 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots)...visualise the contents of genome assembly data sets as a QC step Blaxter La...visualise the contents of genome assembly data s...and control of high-throughput sequencing data). I...
2938 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentional...a. Blobsplorer is unlikely to be of use on its own as it requires contig data to b...
2937 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement fo...ee methods analyse unprocessed sequencing data without relying on prior know...for clustering genomic and transcriptomic data w...Supplementary information: Supplementary data are...2935 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https...of our methods paper An analysis and visualization platform for 'omics data ...
2935 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material...cture. Existing HGT detection algori...ty (CRM). Using CRM, the algorithm assigns a confidence score ba...n tools using a larger strain data set. When combined with additional approaches our new algorithm provides richer picture and b...
2929 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS a...the exercises as it is a language in itself and is used more often to manipulate NGS data as c...2929 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generat...ds-on, meaning that you only need to install SAMtools, and no other tools, and sample data sets...
2928 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This...produce accurate results, A5-miseq requires Illumina data w...fferent assembler if a tool like FastQC reports your data qual...
2872 days ago
- Recent studies of the human genome have indicated that regulator...y elements. These interaction datasets are important resources t...logies, making sense of these datasets demands integrative and e...sualization, integration, and mining. Currently, there is no softw...onal genomics and interaction datasets,...
2924 days ago
