Results for "Data Structure"
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Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identifiers or annotations. To use db2db select the input type of your data, cha...2937 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throug...ng. The package is designed to deal with sequencing data from RRBS and its variants, b...ition, methylKit can deal with base-pair resolution data for...
2936 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC pl...alise the contents of genome assembly data sets as a QC step Blaxter La...alise the contents of genome assembly data sets as a QC step. This repo...control of high-throughput sequencing data). I...
2926 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species poo...bsplorer is unlikely to be of use on its own as it requires contig data to b...
2925 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requiremen...ethods analyse unprocessed sequencing data without relying on prior know...clustering genomic and transcriptomic data with no limitation on ge-nome...plementary information: Supplementary data are...2923 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles...methods paper An analysis and visualization platform for 'omics data ...
2923 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innova...then compared the method to existing HGT detection tools using a larger strain data set....
2917 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as gi...ercises as it is a language in itself and is used more often to manipulate NGS data as c...2917 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowt...meaning that you only need to install SAMtools, and no other tools, and sample data sets...
2916 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform....ce accurate results, A5-miseq requires Illumina data with certain characteristics....nt assembler if a tool like FastQC reports your data qual...
2860 days ago
