Results for "Genome Interpretation"
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Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...e plots (TAGC plots) to visualise the contents of genome assembl...2934 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an ass...sembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is repr...
2934 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targ...structions: set the read length/configuration and genome size, then select what you wa... = Coverage (X),L = Read length (bp), G = Haploid genome size (b...2218 days ago
- ...g of phylogenetically atypical proteins on a genome-wide basis. It works by selec...neage probability index (LPI) score for each genome protein. LPI scores are inve...xplanation of parameter selection and result interpretation. A brief tutorial p...
2926 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...ucial for genetic innovation and the evolution of genome architecture. Existing HGT de...stral (vertically derived) genes in its recipient genome. Detect...
2926 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with unifor...
2925 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at dist...pping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide ma...
2920 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of b...s like performing upper-quantile normalization on expression data or convert genome wide ge...
2919 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than...imeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. ...2913 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembl...
2905 days ago
