LIBSVM -- A Library for Support Vector Machines
...it implements an SMO-type algorithm proposed in this paper:R.-E. Fan, P.-H. Chen, and C.-J. Lin. Working set selection using second order information for training SVM. Journal of...2512 days ago
QuorUM: An Error Corrector for Illumina Reads
...dling the data more complicated because they result in a large number of low-count erroneous k-mers in the reads. However, there is enough information in the reads to correct most...2414 days ago
2408 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...also available as a standalone command-line program. The new engine can annotate a typical-sized bacterial genome within 10 minutes, with rich information such as pseudogenes, translat...2408 days ago
2402 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...ility and implementation: poRe is released as a package for R at http://sourceforge.net/projects/rpore/ . A tutorial and further information are available at https:/...2399 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to opt...2395 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...gned to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers,...2393 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...uns including text and image files. Also included are convenience scripts to: check on a running simulation and see detailed status and logging information; extract fasta sequence files...2384 days ago
2381 days ago