Results for "Next Generation Sequence Analysis"
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Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visual...throughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the paper to cre...2906 days ago
- The Genome Assembly ...GAEMR) package is an assembly analysis framework composed a number of...be entered into GAEMR’s analysis pipeline, hence enabling the generation of standard reports. GAEMR...curately represent the genome sequenced, and how much of that genome...
2906 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display...
2905 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurat...2190 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the me...opment. Here is the acknowledgements section of our methods paper An analysis and visualization platform fo...
2903 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...
2903 days ago
- DarkHorse is a bioinformatic method for rapid, automated identificatio...m a reference database of amino acid sequences, then using these matches to...etic distance between database match sequences and the query genome. These...f the database allows not only query sequence...
2898 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is cr...phylogenetic signal distinguishing the transferred sequence from ancestral (vertically de...a confidence score based on “unusual” sequence...
2898 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience...2898 days ago
- ...an Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sa...a popular open-source tool used in next-generation sequence analysis. This primer provides an intr...is geared towards those new to next-generation sequence analysis. The primer is also designed...
2897 days ago
