Results for "PA"
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Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such...hordate genome data. Ensembl computes pairwise and multiple whole-geno...erent alignment views. The Ensembl comparative genomics infrastructure...to perform and support vertebrate comparative genomic analyses. We us...3041 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3061 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3061 days ago
- ...quences, alignments, variation etc.), as well as specialized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, a highly parallelized program for high-se...
3060 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings....
3058 days ago
- ...he centromeres’ tendency to cluster in 3D space. We first demonstrate the a...e Hi-C data of budding yeast and a human malaria parasite. We then use two metage...even with a limited amount of Hi-C sequencing. Paper:http://www.ncbi.nlm.nih.go...
3057 days ago
- ...ly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic features, and on comparative studies. It uses simple...
3057 days ago
- ...udy, and as a reference and source of knowledge on shell scripting techniques. The exercises and heavily-commented examples invite active reader participation, under the premise that t...
3051 days ago
- ...ry file formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for set...pulating and analyzing data, and data format conversion. More at http://cpansearch.perl.org/src/TJPARNELL...
3050 days ago
