Results for "PacBio read correction"
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Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or prot...sequence-based project, e.g. should the library be paired-end or not, how many reads shou...2593 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...d accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2...ored). Overlapping of reads for de novo assembly. &...e novo assemblies from raw nanopore and PacBio reads without requiring error correction, for which a highly sensitive...2579 days ago
- Circular plots are useful to represent complicated informations. They are used in 2 specific cases: when y...t. This page aims to learn you how to use the library, so I strongly advise to read the g...
2567 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool...timepoints. Visualizing coverage plots of RNA-Seq read alignments. Key Features...SNPs, tab-delimited files Outputs publication-ready figu...
2561 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the release note: Release 0.79. Copy & Paste th...initialization. For more advanced installation process, please read ...2544 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous...ssembly of deep paired-end short reads, and apply it to the assembl...dataset of paired 75-bp Illumina reads derived from the 15.4 megaba...aset, avoiding an explicit error correction step as used in other short-read assemblers. A novel memory-efficien...2426 days ago
QuorUM: An Error Corrector for Illumina Reads
...erroneous k-mers in the reads. However, there is enough in...we use the term “error correction” to denote the re...quence. We developed an error correction software called QuorUM. QuorU...at error correcting Illumina reads for subsequent assembly. It is des...2425 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAd...s-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) wher...ible assemblies, give it both Illumina reads ...2423 days ago
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads. The number of input read sets is not constrained, it can be one, two, or more. No reference genome is needed.
2413 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (Euro...Tulipseed takes as input alignments files of long reads to sparse short seeds, and o...raph and scaffold structures. Tulipbulb adds long read seque...2410 days ago
