LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with...puting server, and even works on desktop/laptop computers. It adopts a novel graph based app...2634 days ago
2630 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate mult...novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on...2625 days ago
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2610 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft...ticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in...enome datasets for the ordering and scaffolding of...mand line input to generate ordered scaffolds...2609 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on...2602 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes...pipeline that combines ab initio gene prediction algorithms with homology based met...2598 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly...t shows its full potential with multi-library Illumina-based pro...2595 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs w...2590 days ago