Results for "Sequence analysis."
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DarkHorse is a bioinformatic method for rapid, automated identificatio...m a reference database of amino acid sequences, then using these matches to...etic distance between database match sequences and the query genome. These...f the database allows not only query sequences...2918 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is c...hylogenetic signal distinguishing the transferred sequence from ancestral (vertically de...a confidence score based on “unusual” sequence...
2918 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required...2918 days ago
- ...outSAMtools is a popular open-source tool used in next-generation sequence analysis. This primer provides an intr...n to SAMtools, and is geared towards those new to next-generation sequence analysis. The primer is also designed t...
2917 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymor...
2917 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-m...
2861 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic locations can interact with each other via ch...
2913 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences...2913 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, whil...
2911 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blast...microarray results, and aligning/annotating novel sequences...
2911 days ago
