GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary...2323 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a...eatures include (i) building gene-based and supermatrix-based phylogenies using a single comman...2311 days ago
Genome assembly stats plotting
A de novo genome assembly can be summarised b y a number of metrics, including:...at summarises most commonly used assembly metrics in a single vis...etween alternative views, and each can be applied to a single or mul...2302 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes...2296 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and d...r “population epigenetic framework” and can perform: (1) epigenome-wide single marker...2281 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environment...amming Foundations for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell R...2254 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technolog...also includes a polisher module, which produces the final assembly of high nucleotide-le...2237 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single refere...2233 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus as...ally run multiple algorithms in an attempt to find the single bes...thm that merges multiple assemblies of a genome into a single superi...2233 days ago
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