Results for "UP"

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  • Strudel

    ...is no need to wait while the maps are generated. It is built using Java 1.6 and ships with its own JRE, so there is no need for users to install or update Java....

    2827 days ago

  • Nemo – A stochastic, individual-base, genetically explicit simulation platform

    ...convenient when specifying large matrices. Many adjustments have been made for refined control of the input of parameters and data output. See updates in the manual....

    2826 days ago

  • COSMIC

    ...cataloguing and interpreting their effects challenging.  The Rearrangement Overview page describes the one or more breakpoints which make up a structural variant. A...

    2826 days ago

  • VirMet

    ...;virmet fetch --viral n, for example, downloads the bacterial database. Other available subcommands so far are fetch download genomes update update viral/bacterial database...

    2817 days ago

  • PHYMMBL

    ...reds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classification of raw sequence reads into groups representing the same or sim...

    2817 days ago

  • Ribbon !!

    ...ple chromosomes, while allowing detailed inspection of individual reads (Supplementary Note 1). For exampl...gure 1a). More gene fusions of this cancer cell line are investigated in Supplementary Note 2. Figure 1b s...

    2807 days ago

  • GenomeScope: open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads

    Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, a...

    2399 days ago

  • IMPUTE2

    ...served genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized a...

    2800 days ago

  • PLINK2

    This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's...

    2800 days ago

  • ART: Set of Simulation Tools

    ...y profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end...

    2793 days ago