regioneR: an R package for the management and comparison of genomic regions
...ith it, it's possible to study the association of a set of regions with other sets of regions, functions defined over the genome or essentially any user defined function. http://gat...1999 days ago
genoPlotR - plot gene and genome maps project!
...graphics of gene and genome maps. It allows the user to read from usual format suc...formats: Genbank, EMBL, blast, Mauve, and from user-generated tab files Plot sev...tations for genomes, based on gene names Add a user-generated tree Add a global...1998 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...ce near identical reciprocal similarities. Details of the OrthoANI algorithm is given in (Lee et al. 2015). OAT employs an easy-to-follow Graphical User Interface that allow research...1998 days ago
KEGG Mapper – Reconstruct Pathway
...r multiple gene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene list contains the user-defined gene identifier follo...1998 days ago
1998 days ago
1994 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...ntigs to keep for the haploid assembly. Dotplots are optionally produced for all flagged contig matches, juxtaposed with read-coverage, to help the user determine the proper assignme...1993 days ago
1993 days ago
NanoPack: visualizing and processing long-read sequencing data
...s and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at h...1985 days ago
1964 days ago