Results for "dRAD and ddRAD sequencing"
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Circos plot tool (J-Circos) that is an interactive visualizatio...cally add data to the figure, and providing information for spe...nts using mouse hover display and zoom in/out functions. J-Circ...plex chromosomal interactions and f...isualize from next-generation sequencing data.2686 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabili...rt findings regarding errors in sequencing. The method can be use...for whole genome shotgun (WGS) seque...the method for variant calling and allele dosage estimation. Results for simulated and real datasets are discussed and prov...2679 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswi...udies span tens of replicates and batches across hundreds of sa...ocols are natively supported, and a...ic, and medical expertise, Strand is bringing individualized medicine...2438 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discover...lly is a highly automated pipeline that aligns long seque...bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to...2676 days ago
- MaxBin is software for binning assembled metagenomic sequences...n algorithm. Users can understand the underlying bins (genomes)...sembled metagenomic sequences and the reads coverage information or sequencing reads. For users' conv...s as well as MaxBin and MaxBin 2.0 sourceforge sit...
2669 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of thr...ing/writing BCF2/VCF/gVCF files and c...lling/filtering/summarising SNP and short indel sequence variantsHTSlibA...reading/writing high-throughput sequencing data Samtools and BCFtools b...
2659 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize...etagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and a...be imported from third-party binning tools and overlaid onto plots, such that resul...2648 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation seque...n a directory containing the necessary input files, and we take care of the rest! For the ea...
2644 days ago
- This website and accompaning documents are intended as a tool to...ith non-model organisms acquire and process transcriptomic high-throughput seque...collection, sample preparation and computer setup, through addressing b...o.html http://sfg.stanford.edu/sequencing.html http://sfg.stanford.edu...
2641 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of impo...roblems. This course addresses the specific strengths and w...nologies, the computational resources needed for HTS, and how to analyze non-mod...
2639 days ago
