Results for "plant genome"
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methylKit is an R package for DNA methylation analysis and annotation from high-thro...tion data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bisulfite sequencing data if...2950 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...age plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...
2940 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAE...sembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is represented by those piece...
2939 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequ...Instructions: set the read length/configuration and genome size, then select what you wa... C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of...2223 days ago
- DarkHorse is a bioinformatic method for rapid, autom...ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...te a lineage probability index (LPI) score for each genome protein. LPI scores are inve...
2931 days ago
- Horizontal gene transfer (HGT), the transfer of genetic m...crucial for genetic innovation and the evolution of genome architecture. Existing HGT de...cestral (vertically derived) genes in its recipient genome. Detecting HGT between closel...
2931 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/dele...
2930 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers)...interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide maps of interactions bet...
2926 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquire...sks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-sco...
2924 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Or...Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. QSCORE >Compare two...2918 days ago
