Mash: fast genome and metagenome distance estimation using MinHash
.... Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10.7. See http://mash.readthedocs.org for more information.2376 days ago
Biological file format tutorial
...plains some of the commonly used file formats in bioinformatics. The information provided here is basic and de...ference between different formats. Please refer user manual or other information resources on web for more det...2371 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...gram output architecture, where the patterns are represented with several HSV values (only value varies). The following image, illustrating the information maps between human and chimpa...2367 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
...for regulatory relationships from over 20 million pubmed articles, we used sentence-based text mining approach. TRRUST database also provides information of mode of regulation (activa...2367 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from related organisms to determ...2312 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph should appear in fasta format with 1 entry per node, the meta information should be in the format:>N...2022 days ago
ECTOOLS: Long Read Correction and other Correction tools
...short, the correction algorithm takes as input the unitigs from a short read assembly and uses them to correct long read data. More background information for the algorithm can be foun...2352 days ago
AliTV—interactive visualization of whole genome comparisons
...multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- genetic information are supported. The user-frien...2347 days ago
2338 days ago
RGFA: powerful and convenient handling of assembly graphs
...merging of linear paths can be performed. A typical application of RGFA is the editing of a graph, to finish the assembly of a sequence, using information not available to the assemble...1607 days ago