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  • flo

    flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is don...

    3062 days ago

  • NCBI Remap

    ...ly similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses diff...ou can use the API for NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www...

    3061 days ago

  • Centurion

    ...ch, centromere locations in yeast genomes are difficult to infer, an...d in most species they are still unknown. Recently, the chromatin co...me assembly, deconvolution of metagenomic samples, and inference of...ria parasite. We then use two metagenomic samples with relatively lo...

    3060 days ago

  • HiCdat

    ...p to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic features, and on comparati...

    3060 days ago

  • UCSC Genome Browser and Blat software !

    This directory contains Genome Browser and Blat application binar...be viewed by running the binary with no arguments. The UCSC Genome Br...Blat software are free for academic, nonprofit, and personal use. A l...about commercial licensing of the Genome Browser software, see http:...

    3054 days ago

  • Advanced Bash-Scripting Guide

    This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an int...a textbook, a manual for self-study, and as a reference and source of knowledge on shell scripting tech...

    3054 days ago

  • BioToolbox

    ...formatic analysis, including working with gene annotation, collecting data scores..., abstracted interface to multiple common gene annotation formats and the collect...e includes scripts for setting up databases of annotation, collecting annotated f...

    3053 days ago

  • Genome Browser : GBrowse

    Generic Genome Browser Version 2: A Tutorial for Administrators...we will be using the "in-memory" GBrowse database (no relational database required!) Later we will show how to set up a genome size database using the ber...

    3053 days ago

  • Stacks

    ...seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. More at http://catchenlab.life.illinois.edu/stacks/

    3048 days ago