Results for "PA"
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...tify both simple and complex rearrangements from paired-end sequencing data. User...by just alling SVelter.py with proper parameters. It's also possible t...tiple cores by calling different sub-functions separately. More at https://...3039 days ago
Pattern Searching in a Single Genome
Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but...3033 days ago
- ...formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on this page is targeted at end-users. F...
2980 days ago
RNA-Seq De novo Assembly Using Trinity
...process large volumes of RNA-seq reads. Trinity partitions the sequence data int...ract full-length splicing isoforms and to tease apart transcripts derived from pa...that share sequences in common). Chrysalis then partitions the full read set amo...3017 days ago
- ...as moved to github, for newer releases of Easyfig please visit our new webpage - https://mjsull.github.io/Easyfig. Easyfig is a Python application for creating linear comparison figures of multiple geno...
2980 days ago
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline3009 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher ...3002 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq3003 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole gen...Solexa (Illumina) sequencing (in development) Pacific Biosciences sequencing...e assembly that I've used and developed during the past 14 years to get assembly jo...
3003 days ago
RACA: Reference-Assisted Chromosome Assembly
...algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end reads. http://www.nc...3003 days ago
