GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not re...2721 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge...2721 days ago
2717 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x...e class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data fr...Obtain QC reports from single-cell RNA-seq data The kallisto...ient pre-processing of single-cell RNA-seq, N...1153 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurat...t software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest...2617 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as dis...ilable only for small-scale analyses of proteins or RNAs to la...2673 days ago
2661 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabili...ons. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They also show applicab...2654 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Iden...ecent challenges in next generation sequencing (NGS). The first theme is large-scale RNA-Seq data analysis. Current cr...lar Identifiers, or UMIs, for DNA-, RNA- and small-RNA-Seq. UMI support in S...2414 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...he Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS read...2651 days ago