PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJel...2668 days ago
2664 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer,...2662 days ago
2662 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
...mples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the use...icantly from one version to another. If you want to use this software, please stay up to date with the...2662 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's...to-date license information. A separate page lists commercial software. Know of any other open source software fo...2652 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and...2641 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 2...vides a stable, tested, documented version of the software. The distribution is us...rceforge.net/ SAMtools], [http://www.cbcb.umd.edu/software/je...2627 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of...ages of adjacencies, and contains in particular all the features of previous software De...2622 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin da...tions that can be directly visualized in a genome browser. ChromHMM software v1...2618 days ago