Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with...® data, in addition to PacBio's own SMRT® Analysis suite. All packages are belie...sed alignment Consensus and variant calling RNA analysis Epigenetic base modification...2648 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide exper...ly contains a large collection of diverse gene set libraries available for analysis and download. In total, Enric...2605 days ago
2598 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those int...The precision is further increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary...2584 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes asse...a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2579 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2578 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms...; Overlapping of reads for de novo assembly. Transcriptome mapping through internal construction of a transcri...2564 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies &...It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale...2559 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of...d trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then...2531 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite...ation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of G...sp;Section 'System Requirements'). Analysis wizards make your life easy:S...ile modules:Advanced users and data analysis experts benefit from GeneProf...2536 days ago