Results for "dRAD and ddRAD sequencing"
Bookmarks
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for Pa...reads include many insertions and deletions, and comparatively less su...on a usual computing server, and even works on desktop/laptop compute...2634 days ago
- DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is pub...sing Long Erroneous Reads of the Third Generation Sequencing Technologies. Sci. Rep. 6, 31...
2625 days ago
- FASTQ format is a text-based format for storing...lly nucleotide sequence) and its corresponding quality sco...res. Both the sequence letter and quality score are each encode...le a FASTA sequence and i...the output of high-throughput sequencing instruments such as the ...
2611 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-L...also hints at probable misassemblies and c...draft. The CLA pipeline was designed and trained extensively on various bacte...2609 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific...ical component of many genome sequencing projects. CABOG operat...oceans (Sargasso Sea in 2004 and Global Ocean Sampling in 2007). It w...from first-generation Sanger sequencing machines and second-generation pyrosequencing mac...2599 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and i...xt we propose a tool that improves assemblies (and, as a...2595 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and c...g substitution errors, we locate and correct insertion, deletion, and hom...nsitive to low coverage areas of sequencing projects. Using published dat...2595 days ago
- The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a comple...te genome is typically a time and resource intensive task. The advent of new sequencing technologies has come...e genomes is more challenging and o...
2593 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies...in real-time with Oxford Nanopore sequencing. The pipeline can run...information such as gene ordering and t...elements (plasmids and genomic islands). Complete paper at https://w...2591 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using divers...em, which combines contig order, distance and o...ing an expectation-maximization procedure and an unconstrained binary quadratic pr...2591 days ago
