Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be...2635 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencin...ning that it uses two sets of reads: the reference read set, whos.... Usually, errors in PacBio reads include many insertions and d...(DBG) representing the short reads, and seeks a corrective seque...2610 days ago
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CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes wi...r (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in better assemble...2585 days ago
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is b...enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly. An i...2577 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA...argasso Sea in 2004 and Global Ocean Sampling in 2007). It was first to combine reads from first-generation Sanger...2575 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina,...ected errors. Furthermore, we show that the quality of assemblies improves when reads are corrected by our software...2570 days ago