SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script lin...2656 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible...® data, in addition to PacBio's own SMRT® Analysis suite. All packages are belie...sed alignment Consensus and variant calling RNA analysis Epigenetic base modification...2648 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide exper...ly contains a large collection of diverse gene set libraries available for analysis and download. In total, Enric...2606 days ago
2599 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those.... The precision is further increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary...2585 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes a...n a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2580 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using...S scaffolders using Illumina paired reads of three bacterial genomes. Our algorith...2580 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2578 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studie...It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale...2559 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph...nd trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then...2532 days ago