Results for "Genome Sequence"
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...erence database of amino acid sequences, then using these matches...ty index (LPI) score for each genome protein. LPI scores are invers...stance between database match sequences and the query genome. These...atabase allows not only query sequences, but also their database mat...2926 days ago
- ...c innovation and the evolution of genome architecture. Existing HGT de...al distinguishing the transferred sequence from ancestral (vertically derived) genes in its recipient genome. Detecting HGT between closely...re based on “unusual” sequence divergence. A gene exhibiting...
2926 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keyword...a popular open-source tool used in next-generation sequence analysis. This primer provide...and is geared towards those new to next-generation sequence analysis. The primer is also...
2924 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with unifor...
2924 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing p...60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or po...
2869 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal...mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-w...
2920 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed...2920 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bio...sks like performing upper-quantile normalization on expression data or convert genome w...
2918 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blast...microarray results, and aligning/annotating novel sequences. If you are an ARB user, you...
2918 days ago
Bioinformatics tools and software
...AST. MUSCLE >Multiple sequence alignment. Faster and more...er genes. Highly accurate OTU sequences and improved diversity measu...ction. PILER >De novo genome repeat finder. PILER-CR &g...f CRISPR repeats in bacterial genomes. QSCORE >Compare two m...2912 days ago
