Results for "Genome Workbench"
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gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on p...rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...taset. It is especially useful for newly sequenced genomes t...2845 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HS...BRs (shared by pigs and cattle) were detected using the pig and human genomes a...2773 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms en...of duplicated genes in the yeast genome. The remaining ambiguities in...We used this test to revisit the genome of S. cerevisiae, reducing th...nal motif discovery. Based on the genome-wi...2773 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input asse...eturns scaffolded homozygous genome assembly, that should be ...lose the gaps resulting from genome assembly or scaffolding ...e laptop for small-to-medium size genomes...
2842 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program...ate contigs/scaffolds assembled in a genome assembly project, in a proces...are important for scaffolding large genomes (multi-library support, bett...and algorithms is available at Genome Bi...2834 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. I...
2834 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large...n the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive endeavor. To get a genome of...
2838 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational...er Institute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...esearch projects that involve comparative genome an...
2837 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "b...n attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome Re...2836 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2824 days ago
