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Pattern Searching in a Single Genome
Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but...3036 days ago
- ...s SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on thi...
2983 days ago
- ...Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with...d tools for the secure, privacy respecting and interoperable sharing of Genomic data. More at http:/...
3022 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinit...3020 days ago
- ...visit our new webpage - https://mjsull.github.io/Easyfig. Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use g...
2983 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA ass...s (called contigs). One can use the sequences of different sequencing technologies either in a single asse...
3006 days ago
RACA: Reference-Assisted Chromosome Assembly
...NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end...tp://www.ncbi.nlm.nih.gov/pubmed/23307812 http://bioen-compbio.bioen.illinois.edu/RACA/3006 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple a...3006 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be u...3006 days ago
- ...COVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed fo...level of completeness and continuity that was not previously possible. DISCOV...n basis, potentially tiling an entire large genome. DISCOVAR variant calling i...
2994 days ago
