Results for "OS"
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...isualise the contents of genome assembly data sets as a QC step. This repository accompanies the paper:Bl...taxon-annotated GC-coverage plots. Sujai Kumar, Martin Jones, Georgios Koutsovoulos, Michael Clarke,...2926 days ago
- ...R) package is an assembly analysis framework composed a number of integrated modu...of standard reports. GAEMR’s analysis philosophy is centered on contiguity...and how much of that genome is represented by those pieces. By performing over t...
2925 days ago
- ...ols. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out those belonging to different taxa....
2925 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: A...
2209 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...vel. Availability and Implementation: Cnidaria is written in C++ and Python and is available at http://www.ab.wur.nl/cnidaria. Contact: Saulo Aflitos - sauloal@gmail.com Suppleme...2922 days ago
- ...sualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many...
2922 days ago
- ...ontal transfer candidates identified by alternative methods, especially those based on nucleic acid signat...ve been horizontally transferred, since they are highly conserved among closely related organisms. One un...
2917 days ago
- ...in its recipient genome. Detecting HGT between closely related species or strains...ic signal is usually weak and the nucleotide composition is normally nearly ident...ed it to identify candidate HGT events between closely related strains. The metho...
2917 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the f...nce-srv2 ~/linuxTutorial]$ I have deliberately chosen Awk in the exercises as it...e keyboard and gives them to the operating system. Most Linux systems utilize Bourne...2917 days ago
- ...This primer provides an introduction to SAMtools, and is geared towards those new to next-generation seque...sample data sets are provided. Terms in bold are also explained in the glossary at the end of the documen...
2916 days ago
