PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...fast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as...es of memory. PEAR evaluates all possible paired-end read overlaps and wit...d implementation, it can merge millions of paired end reads within a couple...3003 days ago
QUAST: quality assessment tool for genome assemblies
...bsp;MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More at http://bi...3003 days ago
REAPR: a universal tool for genome assembly evaluation
...s the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any s...equires as input an assembly in FASTA format and paired reads mapped to the assem...3003 days ago
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Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phr...forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_pair...LEN:36) More at http://www.usadellab.org/cms/?page=trimmomatic2994 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools suc...2983 days ago