2753 days ago
CISA: Contig Integrator for Sequence Assembly
...for bacterial genomes. A tool, named CISA, has been developed to integrate the assemblies into a hybrid set of contigs, resulting in assemblies of superior contiguity and accuracy,...2752 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...ras, etc.), and presence of structural variant breakpoints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times faster and 25% mo...2752 days ago
2747 days ago
2747 days ago
2745 days ago
Finding Patterns in Biological Sequences
...ion, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through h...2744 days ago
2743 days ago
2024 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
.... Ease of Use: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequences. It does not need to be supplied with any knowledge of th...2738 days ago