QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjou...Tags: Bioinformatics, Computational Biology, Assembly, Comparison, Accuracy
2969 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual insp...Tags: Bioinformatics, Computational Biology, Assembly, Comparison, Accuracy, Evaluation
2969 days ago
Tags: Bioinformatics, NGS, Assembly, Quality, FastQC, Tutorial
2960 days ago
Tags: Bioinformatics, NGS, Assembly, DISCOVAR, Variants, BroadInstitute
2957 days ago
Tags: Bioinformatics, NGS, Assembly, Assembler, SPAdes, Reads, Illumina
2956 days ago
Tags: Bioinformatics, Validation, Assembly, BUSCO, Orthologs, NGS
2935 days ago
Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly
2949 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in fo...Tags: Bioinformatics, FASTQ, NGS, Assembly, Genome, CANU, Assembler, Tool, Software
2932 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organis...Tags: Bioinformatics, NGS, Assembly, Tools, Tutorial, Toolbox
2947 days ago
Tags: Bioinformatics, NGS, Assembly, de novo, Sequence, Assembler, Heterozygous
2932 days ago