SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managi...erial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and e...ool, i.e., can be freely downloaded, shared and modified. https://bmcbioinformatics...2566 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for cont...2565 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based...proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger,...hypothesis, e.g. with or without sequencing errors, or with low or high c...2565 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262549 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone rea... Consistently very high sensitivity and precision across different error profiles, rates and seque...nscriptome from a given genomic reference and a GTF file. ...and...2551 days ago
GeneProf: analysis of high-throughput sequencing experiment
...roduced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen ana...put data within a minimum of hands-...nalysis of ChIP-seq and RNA-seq data in one place,...;University of Edinburgh and has benefited from funding by the&nb...2523 days ago
2518 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...the field of bioinformatics, and is currently implemented in all free and commercial bioinformatics pac...the advent of Next Generation Seque...S) and the development of new sequencing techniques, the utility of tr...al efficiency, accessibility, and user experience, so that NGS data ca...2503 days ago
2502 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotat...following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...ome or Firefox) to jointly analyze and precisely describe the features of a...2500 days ago