Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic identification of orthologs for more than 90% of genes and intergen...2757 days ago
Maq: Mapping and Assembly with Quality
...l.pl to the $PATH or to the same directory. Simulate diploid reference and read sequences, map reads, call variants and evaluate the results in one go: maq.pl demo ref.fasta calib...2745 days ago
2745 days ago
2729 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also usef...2725 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse spec...2722 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...amination, chimeras, etc.), and presence of structural variant breakpoints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times f...2722 days ago
2721 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM...2718 days ago
2717 days ago