LoRDEC: a hybrid error correction program for long, PacBio reads
...correct sequencing errors in long reads from 3rd generation sequenci...ning that it uses two sets of reads: the reference read set, whos...(DBG) representing the short reads, and seeks a corrective seque...or each erroneous region of a long read by traversing chosen path...2609 days ago
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CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes w...r (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in better assemble...2584 days ago
2584 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is...enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly. An i...2577 days ago
CABOG: Celera Assembler with Best Overlap Graph
...a time. These programs reconstruct genomes that are billions of letters long from the hundreds of letters...Sea in 2004 and Global Ocean Sampling in 2007). It was first to combine reads from first-generation Sanger...2574 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina,...ected errors. Furthermore, we show that the quality of assemblies improves when reads are corrected by our software...2570 days ago
2568 days ago