2645 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene&nbs...p;count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quant...and Perturb-seq. Obtain QC reports from single-c...;Modular and efficient pre-processing of single-cel...1153 days ago
2690 days ago
2687 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of da...d queuing implementation for MCE supporting normal queues and priority queues from a single mod...2679 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate al...software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest...2617 days ago
2662 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome...the distance between neighboring genes on each DNA molecule and the BLAST E-value score b...g colinear sets of homologous genes found within a single gen...2661 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic...ns. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They also show applicab...2655 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, US...v3.1 address recent challenges in next generation sequenci...NA-Seq, large-scale and UMI support can be used in single-cell-based studies that reveal tu...2414 days ago