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OPERA : Optimal Paired-End Read Assembler
...kipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order and...discordance of scaffolds with the information provided by the paired-end/mate-pair/long reads (for further...2846 days ago
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2791 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and econom...ities. Unfortunately, the mapping and alignment of mate pair read pairs to a referenc...han popular NGS alignment programs when processing mate pair sequencing. Availability...2749 days ago
2744 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...uate contigs from a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled genomes using mate pair information. It is able...2601 days ago