Results for "Pair"
Bookmarks
NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings....3030 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully...lobytes of memory. PEAR evaluates all possible paired-end read overlaps and witho...imized implementation, it can merge millions of paired end reads within a couple o...2975 days ago
- ...rence-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and insert length (for paired-end reads), sequencing cove...
2955 days ago
- ...g data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal with base-pair resolution data for 5hmC obta...
2917 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...ignment of k-mers, Kraken achieves classification accuracy comparable to the fastest BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 m...2893 days ago
- ...c application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editab...guration file that notably specifies the average insert size of the mate-pair library preprocess allows the...
2877 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly prog...wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to...of scaffolds with the information provided by the paired-end/mate-pair/long reads (f...2819 days ago
- ...lex. This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, multi...
2797 days ago
- ...ed sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commerci...
2764 days ago
- .... Most of the individual subcommands will take either a single file or a pair of files as input. If no inpu...ded. For subcommands that generate FASTQ data, either a single file or a pair of files will be generated. I...
2729 days ago
