Results for "Pairs"
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The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than a human&...3749 days ago
Alignment of closely related whole genomes/scaffolds
...across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in length, to aid in the stud...3070 days ago
RNA-Seq De novo Assembly Using Trinity
...s the full read set among these disjoint graphs. Butterfly then processes the individual graphs in parallel, tracing the paths that reads and pairs of reads take within the grap...3016 days ago
REAPR: a universal tool for genome assembly evaluation
...ng information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (...3001 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely...2982 days ago
- ...great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information...
2870 days ago
- ...assembled contigs, paired-end and/or mate pairs sequencing libraries and...genome fragments using paired-end and/or mate-pairs reads gap closing Redunda...or Sanger) and library types (paired-end, mate pairs, fosmids) modular: every ste...
2854 days ago
- ...sp;de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct di...
2833 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...of linkage can thus be finely explored. A new trait coding for (Bateson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompatible loci can be s...2823 days ago
- ...s faster, and more difficult, by producing shorter read lengths than previous technologies. Methods for classifying sequences as short as 100 base pairs (bp) have until now been rela...
2815 days ago
