3040 days ago
2905 days ago
2905 days ago
DeCoSTAR - Detection of Co-evolution
...ral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplication, loss, transfer, which are either given as in...2609 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...o the current assembly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation from a referen...2580 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, w...2564 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...pproach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is present...The method is also useful for retrospective assessments of horizontal transfer prediction reliability, recog...2540 days ago
2394 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
...both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally transferred, and (iii) is fully auto...2331 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM appr...2340 days ago