INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2366 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads...1960 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...binning procedures. Thus, SqueezeMeta features several unique characteristics: Co-assembly procedure with read mapping for estimation of the abundances of genes in each metagenome...1372 days ago