Results for "artifacts"
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BBTools for bioinformatician !
...e negligible). Removing illumina control sequences/phiX reads Code: bbduk.sh in=trimmed.fq.gz out=filtered.fq.gz k=31 ref=artifacts,phix ordered cardinality...2294 days ago
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BIMA V3: an aligner customized for mate pair library sequencing
...me is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paire...2722 days ago
- Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuri...
2177 days ago
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Surrogate Variable Analysis (SVA)
...ata) that can be used in subsequent analyses to adjust for unknown, unmodeled, or latent sources of noise. The sva package can be used to remove artifacts in three ways: (1) identifyi...3498 days ago
Bio-Scripts
- ...Metrics (Picard) Collect metrics to assess oxidative artifacts. CollectQualityYieldMetr...etrics (Picard) Collect metrics to quantify single-base sequencing artifacts. CollectTargetedPcrMet...
2098 days ago
Tags
- Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex structural variant...
Tags: Breakpointer, local, mapping, artifacts, support, sequence, breakpoint, discovery, single-end, reads
2177 days ago
