RACA: Reference-Assisted Chromosome Assembly
...Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome info...2990 days ago
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Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...ting sequences in the published genome of the kelp Saccharina japonica. Analyses were based on multiple blastn searches with short sequence fragments. They revealed a number of pr...2394 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2285 days ago
Digest: In silico restriction digest of complete genomes
...to retrieve number of cleavages yielded by commercially available endonucleases in up-to-date sequenced prokaryotic genomes. When the number of fragments is bellow 50, Pulse Field gel...2223 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to &...2223 days ago
LAMSA: fast split read alignment with long approximate matches
...rategy. That is, LAMSA initially splits the read into relatively long fragments and co-linearly align them to...ing errors, and mitigate the effect of repeats. The alignments of the fragments are then used for implementin...2222 days ago
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