REAPR: a universal tool for genome assembly evaluation
...d paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works b...2992 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...ess. Accuracy: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in...sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation si...2725 days ago
2675 days ago
Pollux: platform independent error correction of single and mixed genomes
...rrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deleti...2584 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
...mic programming to process frame shift. For other protein domains, LTR_FINDER calls ps_scan (from PROSITE, http://www.expasy.org/prosite/) to locate cores of important enzymes if...1980 days ago