Bioinformatics Algorithm Demonstrations and Tutorials
...matching), Hierarchical Clustering (used in phylogenetic studies and microarray analysis of gene expression), a Naive Bayes Classifier for simulated microarray gene expressi...3731 days ago
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ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...e genome shotgun (WGS) sequencing data. They also show applicability of the method for variant calling and allele dosage estimation. Results for simulated and real datasets are discuss...2654 days ago
CLA: Contig-Layout-Authenticator
...of large repetitive contigs. The tool has been validated and compared favorably with other widely-used scaffolding and ordering tools using both simulated and real sequence datasets. C...2584 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...transcriptomic, proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test...2565 days ago
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CHSMiner: a GUI tool to identify chromosomal homologous segments
...ous statistical validation, and its friendly graphical interface allows interactive visualization of the results. We tested the software on both simulated and biological realistic data...2387 days ago