Illumina based assembly pipeline steps !
...CFTools, BEDTools; default for metagenomics data) Variant annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment, mutation...929 days ago
929 days ago
954 days ago
Run Pango on your multifasta file !
...://cov-lineages.org/resources/pangolin/usage.html (base) [jnarayan@hn1 FASTA]$ conda activate pangolin (pangolin) [jnarayan@hn1 FAS.../home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/p.../home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/s...939 days ago
Comment on "Update Pangolin !"
$ pangolin --updatepangolin updated to v3.1.16pangoLEARN updated to 2021-11-04954 days ago