Points: 430
Abhi
Convert #GFF2BED (base) [b@hn1 DUMP]$ awk 'BEGIN {OFS = "\t"};$3=="gene"{print $1,$4-1,$5}' genomic.gff > genes.bed
(257 days ago)
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About me
Bioinformatician by choice
SNP Analysis: Unlocking the Secrets in Our DNA
By Abhi 233 days agoSingle Nucleotide Polymorphisms (SNPs) are the most common type of genetic variation in humans—and many other organisms. A single base change in the DNA sequence (for example, an A instead of a G) can influence everything from our eye color to...P-Value, FDR, q-score: What Do They Mean? A Simple Guide with Example
By Abhi 252 days agoIn statistics and bioinformatics, you’ll often see results reported with p-values, FDR, and q-values (q-scores). But what do these terms mean, and how are they different? Let’s break them down with simple definitions and a step-by-step example.What is Data Science? — A Bioinformatics Perspective
By Abhi 263 days agoIn today’s era of big biology, we’re generating more data than ever before—genomes, transcriptomes, proteomes, metabolomes, microbiomes… you name it. But raw biological data doesn’t speak for itself. Making sense of it requires more than traditional...Cracking the Code: A Guide to Bioinformatics Job Hunting
By Abhi 437 days agoEntering the world of bioinformatics is an exciting journey, filled with opportunities to combine biology, data science, and technology to address some of the most pressing scientific challenges. However, securing a position in this competitive...
Mitochondrial genome assembly tools !
Last updated 912 days ago by AbhiMitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the mitochondrial genome (mitogenome) from sequencing data, typically obtained through techniques like next-generation sequencing (NGS)....-
Read Simulators
Last updated 1253 days ago by Abhi Comments (1)Short Read Simulators With the popularity of next-generation sequencing (NGS) technologies, many NGS read simulators have been developed. Currently, many of the popular short read simulators are designed to simulate reads mimicking many Illumina,... -
Elgg Installation steps !
Last updated 1276 days ago by Abhi Comments (2)Elgg is an open source social networking engine that allows the creation of social environments such as campus social networks and internal collaborative platforms for organizations. Elgg offers a number of social networking features including... -
Special Nucleotide Characters / Symbols !
Last updated 1540 days ago by AbhiNucleotide symbols Nucleotide symbol Full Name A Adenine C Cytosine G Guanine T Thymine U Uracil R Guanine / Adenine (purine) Y Cytosine / Thymine (pyrimidine) K Guanine /...
- Abhi published a blog post SNP Analysis: Unlocking the Secrets in Our DNA
- Abhi published a blog post P-Value, FDR, q-score: What Do They Mean? A Simple Guide with Example
- Abhi published a blog post What is Data Science? — A Bioinformatics Perspective
- Abhi published a blog post Cracking the Code: A Guide to Bioinformatics Job Hunting
- Abhi published a blog post Life as a Bioinformatician – Expectation vs. Reality
- Abhi bookmarked NASA Open Science Data Repository
- Abhi posted a new ad in the Opportunity Bioinformatician in pipeline development
Question: Any good bioinformatics suggestions !
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
Prepare for Coding Interview !
By Abhi 1515 days agoThis is a comprehensive guide to prepare for your next coding interview. It's great for recent graduates and has questions and practice materials structured from traditional big tech interview formats.While it does not include the latest...
Step-by-Step Guide to Detect piRNAs Using Bioinformatics
By Abhi 447 days agoDetecting piRNAs involves a combination of computational and analytical methods to identify these unique small RNAs and their roles in gene regulation and transposable element suppression. By following this step-by-step guide, you can confidently...New Release of RefSeq !
By Abhi 597 days agohttps://ncbiinsights.ncbi.nlm.nih.gov/2024/07/15/refseq-release-225/
NASA Open Science Data Repository
By Abhi 442 days agowww.nasa.gov - The NASA Open Science Data Repository (OSDR) enables access to space-related data from experiments and missions that investigate biological and health responses of terrestrial life to spaceflight. The goal of OSDR is to enable multi-modal and...Bioinformatics Workshops !
By Abhi 583 days agoevomics.org - When delving into bioinformatics, having access to reliable resources is crucial for effective research and analysis. Key online resources include the National Center for Biotechnology Information (NCBI), which offers tools like BLAST for sequence...Variant Calling Resequencing-Based Genome Inference
By Abhi 583 days agoevomics.org - Variant Calling - Resequencing-Based Genome Inference Erik GarrisonUniversity of Tennessee Health Science CenterWorkshop on Genomics - Český KrumlovJanuary 12,...DIY Transcriptomics
By Abhi 583 days agodiytranscriptomics.com - A semester-long course covering best practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies, with a primary focus on empowering students to be independent in the use of lightweight and open-source...
Jit
5557 points
5557 points
Jitendra Narayan
2550 points
2550 points
Rahul Nayak
2300 points
2300 points
Neel
1639 points
1639 points
BioStar
1266 points
1266 points
- By Abhi 661 days agoDengue Virus Genome https:/
/ www.ncbi.nlm.nih.gov/ genomes/ GenomesGroup.cgi?taxid=12637 #Dengue - By Abhi 674 days agoUse a Python Package to Access the RCSB #PDB Search API https:/
/ www.rcsb.org/ news/ feature/ 65a1acf5c76ca3abcc925d0b - By Abhi 1045 days ago
