Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput shor...2728 days ago
3985 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C compiler (it's easy to get this setup - don't panic)...2261 days ago
Reformat the file names with Perl
...);; $| = 1; my %hash; my @files = glob "*.scf"; if (!$ARGV[0]){ print "...e by one for (0..$#files){ $files[$_] =~ s/\.scf$//; my @pName = split /\_/...}"."_$pName[1]"."."."scf"; if ( -f "$files[$_].scf" ) { copy("$files[$_].scf",...2379 days ago
Perl script to count the number of files in a directory with regex
...HPRIM16_","_A21_","_A22_","_A32_","_A33_","_A24_","_A25_","_A23_","_B34_","_B38_","_E3B2_","_E3T1_","_HPRIM14_","_H158_"); my @files = glob("*.scf *.SCF"); foreach my $name (@allNam...2280 days ago
Comment on "Setting up autoConTAMPR !"
Setting up mafft (7.123-1) ...Setting up maq (0.7.1-5) ...Setting up muscle (1:3.8.31-1) ...Setting up perl-doc (5.18.2-2ubuntu1.7) ...Setting up perl-tk (1:804.031-1b...1485 days ago
Comment on "Installing Bio::SCF perl module"
In Ubuntu, you can try the following command to install perl packages: sudo apt-get install libbio-scf-perlsudo apt-get install -y bioperlsudo apt-get install -y libstatistics-distributions-perlsudo apt-get install -y libterm-progressbar-simple-perl1554 days ago