BBTools for bioinformatician !
...e negligible). Removing illumina control sequences/phiX reads Code: bbduk.sh in=trimmed.fq.gz out=filtered.fq.gz k=31 ref=artifacts,phix ordered cardinality...2305 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...me is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paire...2733 days ago
2188 days ago
Surrogate Variable Analysis (SVA)
...ata) that can be used in subsequent analyses to adjust for unknown, unmodeled, or latent sources of noise. The sva package can be used to remove artifacts in three ways: (1) identifyi...3510 days ago
2110 days ago