3998 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...application, characterizes SNPs located in vicinity of SNP of interest; Input: enter SNP ID (rsID), choose population, region, measure for LD, threshold plot format, color of SNPs, a...2961 days ago
Genome Assembly Tools and Software - PART1 !!
...he following main functionalities.1.Assembly. This step performs k-mer counting. Then we find frequent k-mers whose frequencies are over certain threshold. We then assemble these frequ...2738 days ago
Short-read assembly using Spades !
...eads -2 is input file of reverse reads --careful minimizes mismatches and short indels --cov-cutoff auto computes the coverage threshold (rather than the default sett...877 days ago